AlphaGEmmaNOME
A Gemma-powered genomic copilot that calls AlphaGenome, renders epigenomic tracks, designs genome edits, and fine-tunes the agent locally.
genomics LLM agent AlphaGenome Gemma LangGraph fine-tuning
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Projects
A selection of research and engineering projects I've worked on.
SAM3-WebTracker
A full-stack web app for interactive video instance segmentation and tracking on Meta's SAM 3, with a downstream pipeline for quantifying animal behavior from tracked masks.
computer-vision SAM3 video-segmentation object-tracking behavioral-neuroscience FastAPI React full-stack
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AI-Neuroscientist
An autonomous research agent that plans and executes bioinformatics analyses on spatial and single-cell transcriptomics data, writing and running its own notebook code against a live kernel.
LLM agent bioinformatics single-cell spatial-transcriptomics scanpy Ollama
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Dynamic Missingness-Aware Meta-Ensembling
Ensemble statistical learning algorithms for dealing with large amounts of missing data.
machine-learning missing-data
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